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1

Biophysical Models of Protein Evolution: Understanding the Patterns of Evolutionary Sequence Divergence

Echave, Julian, Wilke, Claus O.

Journal:

Annual Review of Biophysics

Year:

2017

Language:

english

File:

PDF, 709 KB

english, 2017

2

Baker-Campbell-Hausdorff relations for finite-dimensional lie algebras

Julián Echave, Francisco M. Fernández

Journal:

Journal of Mathematical Chemistry

Year:

1992

Language:

english

File:

PDF, 483 KB

english, 1992

3

Teaching noncovalent interactions using protein molecular evolution

María Silvina Fornasari, Gustavo Parisi, Julián Echave

Journal:

Biochemistry and Molecular Biology Education

Year:

2008

Language:

english

File:

PDF, 67 KB

english, 2008

4

Delay Model of the Circadian Pacemaker

MARTÍN A. LEMA, DIEGO A. GOLOMBEK, JULIÁN ECHAVE

Journal:

Journal of Theoretical Biology

Year:

2000

Language:

english

File:

PDF, 176 KB

english, 2000

5

Evolutionary Analysis of γ-Carbonic Anhydrase and Structurally Related Proteins

Gustavo Parisi, Marı&amp, #x0301, a Fornasari, Julián Echave

Journal:

Molecular Phylogenetics and Evolution

Year:

2000

Language:

english

File:

PDF, 1.06 MB

english, 2000

6

Potential optimized discrete variable representation

Julián Echave, David C. Clary

Journal:

Chemical Physics Letters

Year:

1992

Language:

english

File:

PDF, 347 KB

english, 1992

7

The magnus expansion for the damped harmonic oscillator

Francisco M. Fernández, Julián Echave, Eduardo A. Castro

Journal:

Chemical Physics

Year:

1987

Language:

english

File:

PDF, 276 KB

english, 1987

8

Evolutionary divergence of protein structure: The linearly forced elastic network model

Journal:

Chemical Physics Letters

Year:

2008

Language:

english

File:

PDF, 342 KB

english, 2008

9

The effect of the symmetric and asymmetric stretching vibrations on the CH3D+O(3P)→CH3+OD reaction

Juliana Palma, Julián Echave, David C. Clary

Journal:

Chemical Physics Letters

Year:

2002

Language:

english

File:

PDF, 114 KB

english, 2002

10

An analytical Fourier transform method for semiclassical quantization

Juliana Palma, Julián Echave

Journal:

Chemical Physics Letters

Year:

1997

Language:

english

File:

PDF, 338 KB

english, 1997

11

Theoretical study of the solvatochromism of a merocyanine dye

Sebastián Fernández Alberti, Julián Echave

Journal:

Chemical Physics

Year:

1997

Language:

english

File:

PDF, 748 KB

english, 1997

12

A perturbative view of protein structural variation

Julián Echave, Francisco M. Fernández

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 164 KB

english, 2010

13

Quantum study of the structure of the active site of methylamine dehydrogenase

Gustavo Pierdominici-Sottile, Julián Echave, Juliana Palma

Journal:

International Journal of Quantum Chemistry

Year:

2005

Language:

english

File:

PDF, 164 KB

english, 2005

14

Computational characterisation of potential RNA-binding sites in arenavirus nucleocapsid proteins

Gustavo Parisi, Julián Echave, Daniel Ghiringhelli, Victor Romanowski

Journal:

Year:

1996

Language:

english

File:

PDF, 591 KB

english, 1996

15

Hearth dry weight in nephrectomized mice

Julian M. Echave Llanos, A. F. Badrán

Journal:

Naturwissenschaften (The Science of Nature)

Year:

1964

Language:

english

File:

PDF, 165 KB

english, 1964

16

Lebermitosehemrnung durch Homogenate regenerierender Leber

Ernesto G. Bade, Julián M. Echave Llanos

Journal:

Naturwissenschaften (The Science of Nature)

Year:

1962

Language:

german

File:

PDF, 331 KB

german, 1962

17

The Quitel-2002

Oscar N. Ventura, Marco Antonio Chaer Nascimento, Julián Echave

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2003

Language:

english

File:

PDF, 104 KB

english, 2003

18

Evolutionary Conservation of Protein Backbone Flexibility

Sandra Maguid, Sebastián Fernández-Alberti, Gustavo Parisi, Julián Echave

Journal:

Journal of Molecular Evolution

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

19

Gamma carbonic anhydrases in plant mitochondria

Gustavo Parisi, Mariano Perales, María Fornasari, Alejandro Colaneri, Nahuel Schain, Diego Casati, Sabrina Zimmermann, Axel Brennicke, Alejandro Araya, James Ferry, Julián Echave, Eduardo Zabaleta

Journal:

Plant Molecular Biology

Year:

2004

Language:

english

File:

PDF, 470 KB

english, 2004

20

Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I

Mariano Perales, Gustavo Parisi, María Silvina Fornasari, Alejandro Colaneri, Fernando Villarreal, Nahuel González-Schain, Julián Echave, Diego Gómez-Casati, Hans-Peter Braun, Alejandro Araya, Eduardo

Journal:

Plant Molecular Biology

Year:

2004

Language:

english

File:

PDF, 514 KB

english, 2004

21

Rotationally and vibrationally inelastic scattering of 41 D2CO

Geert-Jan Kroes, Julián Echave, David C. Clary

Journal:

Chemical Physics

Year:

1992

Language:

english

File:

PDF, 972 KB

english, 1992

22

The interface of protein structure, protein biophysics, and molecular evolution

David A. Liberles, Sarah A. Teichmann, Ivet Bahar, Ugo Bastolla, Jesse Bloom, Erich Bornberg-Bauer, Lucy J. Colwell, A. P. Jason de Koning, Nikolay V. Dokholyan, Julian Echave, Arne Elofsson, Dietlind

Journal:

Protein Science

Year:

2012

Language:

english

File:

PDF, 1.00 MB

english, 2012

23

Twenty-four-hour rhythm in the mitotic activity and in the water and dry matter content of regenerating liver

Jose Russo, Julian M. Echave Llanos

Journal:

Cell and Tissue Research

Year:

1964

Language:

english

File:

PDF, 308 KB

english, 1964

24

Assessing local structural perturbations in proteins

Martin A Lema, Julian Echave

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 660 KB

english, 2005

25

The structurally constrained protein evolution model accounts for sequence patterns of the LβH superfamily

Gustavo Parisi, Julián Echave

Journal:

BMC Evolutionary Biology

Year:

2004

Language:

english

File:

PDF, 595 KB

english, 2004

26

Generality of the Structurally Constrained Protein Evolution model: assessment on representatives of the four main fold classes

Gustavo Parisi, Julián Echave

Journal:

Year:

2005

Language:

english

File:

PDF, 639 KB

english, 2005

27

Evolutionary conservation of protein vibrational dynamics

Sandra Maguid, Sebastian Fernandez-Alberti, Julian Echave

Journal:

Year:

2008

Language:

english

File:

PDF, 402 KB

english, 2008

28

Dynactins p25 and p27 are predicted to adopt the LβH fold

Gustavo Parisi, Marı́a Silvina Fornasari, Julián Echave

Journal:

Year:

2004

Language:

english

File:

PDF, 374 KB

english, 2004

29

On the evolutionary conservation of protein dynamics

Journal:

Physics of Life Reviews

Year:

2013

Language:

english

File:

PDF, 107 KB

english, 2013

30

Exploring the Common Dynamics of Homologous Proteins. Application to the Globin Family

Maguid, Sandra, Fernandez-Alberti, Sebastian, Ferrelli, Leticia, Echave, Julian

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 635 KB

english, 2005

31

Rate Constants for the CH 4 + H → CH 3 + H 2 Reaction Calculated with a Generalized Reduced-Dimensionality Method †

Palma, Juliana, Echave, Julián, Clary, David C.

Journal:

Journal of Physical Chemistry A

Year:

2002

Language:

english

File:

PDF, 44 KB

english, 2002

32

A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility

Huang, Tsun-Tsao, del Valle Marcos, María, Hwang, Jenn-Kang, Echave, Julian

Journal:

BMC Evolutionary Biology

Year:

2014

Language:

english

File:

PDF, 279 KB

english, 2014

33

Molecular Dynamics Study of the Active Site of Methylamine Dehydrogenase

Pierdominici-Sottile, Gustavo, Echave, Julián, Palma, Juliana

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 269 KB

english, 2006

34

Caging and excited state emission of ICN trapped in cryogenic matrices: experiment and theory

Helbing, Jan, Chergui, Majed, Fernandez-Alberti, Sebastian, Echave, Julian, Halberstadt, Nadine, Alberto Beswick, J.

Journal:

Physical Chemistry Chemical Physics

Year:

2000

Language:

english

File:

PDF, 235 KB

english, 2000

35

Quantum scattering and quasi-classical trajectory calculations for the H2+OH ⇌ H2O+H reaction on a new potential surface

Pogrebnya, Sergei K., Palma, Juliana, Clary, David C., Echave, Julian

Journal:

Physical Chemistry Chemical Physics

Year:

2000

Language:

english

File:

PDF, 187 KB

english, 2000

36

Quasiclassicaltrajectorystudyof thereactionH2+OH→H2O+H: Comparison with quantum results

Palma, Juliana, Echave, Julián, Clary, David C.

Journal:

Journal of the Chemical Society Faraday Transactions

Year:

1997

Language:

english

File:

PDF, 325 KB

english, 1997

37

Molecular transition probabilities for time-dependent, bilinear Hamiltonians in many dimensions: A recursive procedure

Fernandez, Francisco M., Micha, David A., Echave, Julian

Journal:

Physical Review A

Year:

1989

Language:

english

File:

PDF, 325 KB

english, 1989

38

Quantum theory of four-atom reactions using arrangement channel hyperspherical coordinates: Formulation and application to OH+H2↔H2O+H

Pogrebnya, Sergei K., Echave, Julian, Clary, David C.

Journal:

The Journal of Chemical Physics

Year:

1997

Language:

english

File:

PDF, 467 KB

english, 1997

39

Preparation of Liver Tissue for the Evaluation of Mitotic Activity

Echave Llanos, Julian M., Sadnik, Isaac

Journal:

Biotechnic & Histochemistry

Year:

1964

Language:

english

File:

PDF, 882 KB

english, 1964

40

Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites

Echave, Julian, Jackson, Eleisha L, Wilke, Claus O

Journal:

Physical Biology

Year:

2015

Language:

english

File:

PDF, 597 KB

english, 2015

41

Textbook of Structural Biology by Anders Liljas, Lars Liljas, Jure Piskur, Göran Lindblom, Poul Nissen, and Morten Kjeldgaard

Journal:

Trends in Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 94 KB

english, 2009

42

Causes of evolutionary rate variation among protein sites

Echave, Julian, Spielman, Stephanie J., Wilke, Claus O.

Journal:

Nature Reviews Genetics

Year:

2016

Language:

english

File:

PDF, 806 KB

english, 2016

43

Quasi-classical rate constants for the inelastic process O 2 (υ i ≫ 1) + O 2 → O 2 (υ f ) + O 2

Campos-Martínez, ~José, Carmona-Novillo, Estela, Echave, Julián, Hernández, Marta I., Palma, Juliana

Journal:

Molecular Physics

Year:

2000

Language:

english

File:

PDF, 414 KB

english, 2000

44

What evolution tells us about protein physics, and protein physics tells us about evolution

Bastolla, Ugo, Dehouck, Yves, Echave, Julian

Journal:

Current Opinion in Structural Biology

Year:

2017

Language:

english

File:

PDF, 597 KB

english, 2017

45

On the convergence of the Magnus expansion in the Schrödinger representation

Fernández, Francisco M., Echave, Julián, Castro, Eduardo A.

Journal:

Journal of Mathematical Physics

Year:

1990

Language:

english

File:

PDF, 434 KB

english, 1990

46

Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes

Jack, Benjamin R., Meyer, Austin G., Echave, Julian, Wilke, Claus O., Petsko, Gregory A.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.75 MB

english, 2016

47

Local Packing Density Is the Main Structural Determinant of the Rate of Protein Sequence Evolution at Site Level

Yeh, So-Wei, Huang, Tsun-Tsao, Liu, Jen-Wei, Yu, Sung-Huan, Shih, Chien-Hua, Hwang, Jenn-Kang, Echave, Julian

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 1.28 MB

english, 2014

48

Why are the low-energy protein normal modes evolutionarily conserved?

Journal:

Pure & Applied Chemistry

Year:

2012

Language:

english

File:

PDF, 166 KB

english, 2012

49

Beyond stability constraints: a biophysical model of enzyme evolution with selection on stability and activity

Echave, Julian, Thorne, Jeffrey

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 528 KB

english, 2018

50

Further studies on the ultrastructure of the pars distalis of the male mouse hypophysis

Gomez-Dumm, César L.A., Echave-Llanos, Julián M.

Journal:

Cells Tissues Organs

Year:

1972

Language:

english

File:

PDF, 3.47 MB

english, 1972